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Sep 21, 2020 J Immunol

TL1A Promotes Lung Tissue Fibrosis and Airway Remodeling

Herro R, Miki H, Sethi GS, Mills D, Mehta AK, Nguyen XX, Feghali-Bostwick C, Miller M, Broide DH, Soloff R, Croft M

Jul 1, 2020 SSRN

Single-Cell Transcriptomic Analysis of SARS-CoV-2 Reactive CD4 + T Cells

Meckiff BJ, Ramírez-Suástegui C, Fajardo V, Chee SJ, Kusnadi A, Simon H, Grifoni A, Pelosi E, Weiskopf D, Sette A, Ay F, Seumois G, Ottensmeier C, Vijayanand P.

Sep 30, 2020 Genome Biol.

Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation.

Roayaei Ardakany A, Gezer HT, Lonardi S, Ay F.

Mar 15, 2020 Nat Protoc.

Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2

Kaul A, Bhattacharyya S, Ay F

Mar 24, 2020 Lancet Infect Dis

Safety and immunogenicity of th tetravalent, live-attenuated dengue vaccine Butantan-DV in adults in Brazil: a two-step, double-blind, randomized placebo-controlled phase 2 trial

Kallas EG, Precioso AR, Palacios R, Thome B, Braga PE, Vanni T, Campos LMA, Ferrari L, Mondini G, da Graca Salomao M, da Silva A, Espinola HM, do Prado Santos J, Santos CLS, Timenetsky MDCST, Miraglia JL, Gallina NMF, Weiskopf D, Sette A, Goulart R, Salles RT, Maestri A, Sallum AME, Farhat SCL, Sakita NK, Ferreira JCOA, Silverira CGT, Casta PR, Raw I, Whitehead SS, Durbin AP, Kalil J

Epigenomics Session at PSB 2013

Epigenomics Session. Pacific Symposium on Biocomputing 2013 Project Link

Tutorial at ACM-BCB 2015

ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), 2015 The field of regulatory genomics has recently witnessed

P. Falciparum Epigenetic Gene Regulation

The third dimension of epigenetic gene regulation in the malaria parasite Plasmodium falciparum. Project Link

P. Falciparum 3 D Genome Organization

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene

Fit-Hi-C: Statistical Confidence Estimation for Hi-C Data

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such

Nov 16, 2016 Nature Communications

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells.

Schmiedel BJ, Seumois G, Samaniego-Castruita D, (...) Sette A, Peters B, Vijayanand P*.

Jul 15, 2019 J Immunol

Human eosinophils express a distinct gene expression program in response to IL-3 compared with common β-chain cytokines IL-5 and GM-CSF

Nelson RK, Brickner H, Panwar B, Ramírez-Suástegui C, Herrera-de la Mata S, Liu N, Diaz D, Alexander LEC, Ay F, Vijayanand P, Seumois G, Akuthota P