Saphire Lab

Erica Ollmann Saphire, Ph.D., MBA

Professor, President & Chief Executive Officer

Center for Autoimmunity and Inflammation
Center for Cancer Immunotherapy
Center for Sex-based Differences in the Immune System
Center for Vaccine Innovation

The beauty of structural biology is that it gives you the ability to dissect the molecular details at high resolution to explain precisely how something works.

The Ollmann Saphire Laboratory is driven by a commitment to transform our understanding of emerging infectious diseases and accelerate the development of vaccines and therapeutics. Our work has delivered landmark structural insights into viral envelope glycoproteins from Ebola, Marburg, Bundibugyo, Lassa, rabies virus, herpesviruses like CMV, and Human Endogenous Retroviruses, revealing how these pathogens enter cells, evade immunity, and can be targeted by medical countermeasures. We have also discovered and characterized some of the first human antibodies with broad activity against filoviruses, as well as novel human antibody responses to Measles virus and HERV-K. These discoveries provide a foundation for the rational design of next-generation vaccines and antibody therapies.

Another focus of the laboratory is uncovering the molecular mechanisms that govern viral assembly, maturation, and transmission. By pioneering the application of cryo-electron tomography and other advanced structural approaches, we have revealed how viruses such as Ebola and measles are built within infected cells and how their architecture shapes infection and immune recognition.

Our impact extends beyond the laboratory bench. Through leadership of international research consortia and rapid-response scientific networks, we helped establish and coordinate antibody discovery, characterization, and data-sharing pipelines that accelerated countermeasure development during outbreaks of Ebola, Lassa fever, and SARS-CoV-2. These collaborative efforts have enabled scientists around the world to move faster from discovery to intervention.

Today, we integrate cryo-electron microscopy, cryo-electron tomography, X-ray crystallography, virology, immunology, biochemistry, and biophysics to understand the dynamic interface between host and pathogen. By combining multidisciplinary expertise with global collaboration, we seek to reveal fundamental mechanisms of immunity and infection while advancing vaccines and antibody-based therapies that improve human health worldwide.

Featured Publications

Norris MJ, Henderson LA, Siddiquey MNA, Yin J, Yoo K, Brunel S, Mor M, Saphire EO, Benedict CA, Kamil JP
Sharma S, Gibbons A, Saphire EO
Shek J, Sun C, Wilson EM, Moadab F, Hastie KM, Rajamanickam RR, Penalosa PJ, Harkins SS, Parekh D, Hariharan C, Zyla DS, Yu C, Shaffer KCL, Lewis VI, Avalos RD, Mustelin T, Saphire EO.
Marissa Acciani, Dawid Zyla, Gele Niemeyer, Stephanie Harkins, Diptiben Parekh, Emily Pawlack, Davide Lacarbonara, Dhvanir Kansara, Margaret E Ackerman, Stefan Niewiesk, Matteo Porotto, Kathryn M Hastie, Erica Ollmann Saphire
Dawid S Zyla, Roberta Della Marca, Gele Niemeyer, Gillian Zipursky, Kyle Stearns, Cameron Leedale, Elizabeth B Sobolik, Heather M Callaway, Chitra Hariharan, Weiwei Peng, Diptiben Parekh, Tara C Marcink, Ruben Diaz Avalos, Branka Horvat, Cyrille Mathieu, Joost Snijder, Alexander L Greninger, Kathryn M Hastie, Stefan Niewiesk, Anne Moscona, Matteo Porotto, Erica Ollmann Saphire
Reika Watanabe, Dawid Zyla, Diptiben Parekh, Connor Hong, Ying Jones, Sharon L Schendel, William Wan, Guillaume Castillon, Erica Ollmann Saphire

Lab Members

Avery Becker

Student Trainee

Reika Castillon, Ph.D.

Staff Scientist

Yuhan Chen

Student Trainee

Annette Choi, Ph.D.

Postdoctoral Fellow

Onyeka Chukwudozie

UCSD Graduate Student

Jake Coast

Research Tech I
Photo portrait of LJI Cryo-EM Core Director Ruben Alavos Diaz, Ph.D.

Ruben Diaz Avalos, Ph.D.

Cryo-EM Core Director

Grace Driscoll

Lab Assistant

Ronja Frigard

Rotating Graduate Student

Theresa Gewering, Ph.D.

Postdoctoral Fellow

Stephanie Harkins, Masters

Staff Scientist

Denver Harris

Student Trainee

Jamie Ko

Project Manager

Michael Mor Mordekovich, Ph.D.

Postdoctoral Fellow

Gele Niemeyer

UCSD Graduate Student

Laura Odongo, Ph.D.

Postdoctoral Fellow

Joshua Pankrac, Ph.D.

Program Manager

Diptiben Parekh

Lab Manager/Research Tech IV

Hariom Parekh

Student Volunteer

Sagar Patel

Student Trainee

Mahady Rabbani

Student Trainee

Libby Sanders

Student Trainee
Portrait photo of Dr. Saphire. She is wearing green and smiling at the camera

Erica Ollmann Saphire, Ph.D., MBA

Professor, President & Chief Executive Officer

Aaron Seese

Staff Scientist

Kelly Shaffer

UCSD Graduate Student

Jaladhi Shah, Masters

UCSD Graduate Student

Chen Sun, Ph.D.

Postdoctoral Fellow

Elaine Thai, Ph.D.

Postdoctoral Fellow

Reika Watanabe, Ph.D.

Staff Scientist

Xiaoying Yu, Ph.D.

Staff Scientist

Michelle Zandonatti, Masters

Research Tech IV

Authur Zeng

Student Trainee

Research Projects

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From the Lab

As measles virus spreads, scientists race to develop life-saving therapies
LJI scientists discover — and test — human antibodies with the potential to prevent and treat measles virus infection
Saphire and Kronenberg have made major immunology breakthroughs. Now they will receive one of the nation's highest honors.
“LJI supporters are leaders in our shared mission to fight disease and ensure humanity can benefit from cutting-edge medical advances.”
LJI scientists uncover a new avenue for stopping cancers, autoimmune diseases, and more.
Sex chromosomes make a big difference for disease risk—but hormonal and environmental cues play their parts

Awards & Honors

Pantheon Awardee for Academia, Non-Profit, & Research, California Life Sciences, 2023
Fulbright Global Scholar Award, 2019-2020
Mercator Fellowship, DFG, Philipps Universitaet Marburg, 2018
Eli Lilly and Company-Elanco Research Award, American Society for Microbiology, 2016
Finalist, Classy Award for the Most Innovative Nonprofits and Social Enterprises of 2016 for VIC, 2016
“Cool Woman”, Girl Scouts San Diego, 2016
William Prusoff Young Investigator Award, Int. Society for Antiviral Research, 2015
Young Investigator Award, ASBMB, 2015
Fellow, American Association for the Advancement of Science, 2015
Fellow, American Academy of Microbiology, 2014
Presidential Early Career Award in Science and Engineering, 2009
Investigator in the Pathogenesis of Infectious Disease, Burroughs Wellcome Fund, 2009-2015
ICAAC Young Investigator Award, American Society for Microbiology, 2006
Career Award in the Biomedical Sciences, Burroughs Wellcome Fund, 2003-2008
New Initiatives Award in Global Infectious Disease, Ellison Medical Foundation, 2003
Surhain Sidhu Award, 2003

Contact Lab Members

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