» Publications

Feb 16, 2021 Cell Rep Med.

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

Tarke A, Sidney J, Kidd CK, Dan JM, Ramirez SI, Yu ED, Mateus J, da Silva Antunes R, Moore E, Rubiro P, Methot N, Phillips E, Mallal S, Frazier A, Rawlings SA, Greenbaum JA, Peters B, Smith DM, Crotty S, Weiskopf D, Grifoni A, Sette A.

Jan 6, 2021 Science

Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection

Dan JM, Mateus J, Kato Y, Hastie KM, Yu ED, Faliti CE, Grifoni A, Ramirez SI, Haupt S, Frazier A, Nakao C, Rayaprolu V, Rawlings SA, Peters B, Krammer F, Simon V, Saphire EO, Smith DM, Weiskopf D, Sette A, Crotty S.

Oct 16, 2020 Sci Adv

The healthy exocrine pancreas contains preproinsulin-specific CD8 T cells that attack islets in type 1 diabetes

Bender C, Rodriguez-Calvo T, Amirian N, Coppieters KT, von Herrath MG.

Oct 12, 2020 Am. J. Trop. Med. Hyg

Whole Genome Sequencing of Dengue Virus Serotype 2 from Two Clinical Isolates and AU3 AU2 Serological Profile of Dengue in the 2015–2016 Nepal Outbreak

Manandhar K, McCauley M, Gupta BP, Kurmi R, Adhikari A, Nguyen A, Ngono AE, Zompi S, Sessions O, Shresta S.

Oct 9, 2020 Clin Infect Dis

Interferon-gama release assay for accurate detection of SARS-CoV-2 T cell response

Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N

Oct 6, 2020 Nat Rev Immunol

Cross-reactive memory T cells and herd immunity to SARS-CoV-2

Lipsitch M, Grad YH, Sette A, Crotty S

Oct 3, 2020 Mov Disord

Inflammation in experimental models of a-synucleinopathies

Harms AS, Kordower JH, Sette A, Lindestam Arlehamn CS, Sulzer D, Mach RH

Oct 2, 2020 Cell

Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction

Wells DK, van Buuren MM, Dang KK, Hubbard-Lucey VM, Sheehan KCF, Campbell KM, Lamb A, Ward JP, Sidney J, Blazquez AB, Rech AJ, Zaretsky JM, Comin-Anduix B, Ng AHC, Chour W, Yu TV, Rizvi H, Chen JM, Manning P, Steiner GM, Doan XC; Tumor Neoantigen Selection Alliance, Merghoub T, Guinney J, Kolom A, Selinsky C, Ribas A, Hellmann MD, Hacohen N, Sette A, Heath JR, Bhardwaj N, Ramsdell F, Schreiber RD, Schumacher TN, Kvistborg P, Defanoux NA

Oct 1, 2020 Cell

Lifted Up from Lockdown

Arturo EC, Saphire EO

Sep 30, 2020 Front Public Health

Corona Pandemic: Assisted Isolation and Care to Protect Vulnerable Populations May Allow Us to Shorten the Universal Lock-Down and Gradually Re-open Society

Ludvigsson J, von Herrath MG, Mallone R, Buschard K, Cilio C, Craig M, Ilonen J, Leslie D, McGeoch JEM, Schneider D, Skyler JS, Flodström Tullberg M, Hober D.

Sep 30, 2020 J Virol

Identification and characterization of CD4+ T cell epitopes after Shingrix vaccination

Voic H, de Vries RD, Sidney J, Rubiro P, Moore E, Philllips E, Mallal S, Schwan B, Weiskopf D, Sette A, Grifoni A

Sep 30, 2020 Genome Biol.

Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation.

Roayaei Ardakany A, Gezer HT, Lonardi S, Ay F.