TCRMatch: predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors.

Sep 28, 2023 Vaccines (Basel)

Evaluation of cross-immunity to the Mpox virus due to historic Smallpox vaccination

Matusali G, Petruccioli E, Cimini E, Colavita F, Bettini A, Tartaglia E, Sbarra S, Meschi S, Lapa D, Francalancia M, Bordi L, Mazzotta V, Coen S, Mizzoni K, Beccacece A, Nicastri E, Pierelli L, Antinori A, Girardi E, Vaia F, Sette A, Grifoni A, Goletti D, Puro V, Maggi F

Oct 1, 2023 Nat Immunol

Prior vaccination promotes early activation of memory T cells and enhances immune responses during SARS-CoV-2 breakthrough infection

Painter MM, Johnston TS, Lundgreen KA, Santos JJS, Qin JS, Goel RR, Apostolidis SA, Mathew D, Fulmer B, Williams JC, McKeague ML, Pattekar A, Goode A, Nasta S, Baxter AE, Giles JR, Skelly AN, Felley LE, McLaughlin M, Weaver J; Penn Medicine BioBank; Kuthuru O, Dougherty J, Adamski S, Long S, Kee M, Clendenin C, da Silva Antunes R, Grifoni A, Weiskopf D, Sette A, Huang AC, Rader DJ, Hensley SE, Bates P, Greenplate AR, Wherry EJ

Oct 3, 2023 Bioinformatics

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing.

Şapcı AOB, Lu S, Yan S, Ay F, Tastan O, Keleş S.