Publications

All      Ay      Benedict       Cheroutre       Croft       Crotty      Einav       Grifoni       Hogan       Kronenberg      Lisdestam Arlehamn      Myers      Peters      Rao      Reina      Saphire      Schmiedel      Schoenberger      Sette      Sharma      Shresta      Vijayanand      Weiskopf

Altman             Eschweiler      Hedrick       Kawakami      Ley      Pandurangan      Seumois      Von Herrath      
08/03/2026
  • Nature Immunology

Tissue-resident immune cells drive genetic risk in autoimmune and lung diseases

Benjamin J. Schmiedel, Cristian Gonzalez-Colin, Vicente Fajardo-Rosas, Job Rocha, Hayley Simon, Johannes Ottensmeier, Ignacio E. Ramírez-Bernabé, April Cano, Angel De la Cruz Castillo, Elizabeth Márquez-Gómez, Brendan Ha, Jason A. Greenbaum, Lindsey Chudley, Judith Cave, Aiman Alzetani, Edwin Woo, Michael Shackcloth, Serena J. Chee, Vivek Chandra, Mitchell Kronenberg, Bjoern Peters, Christian H. Ottensmeier, Anusha-Preethi Ganesan & Pandurangan Vijayanand
01/16/2024
  • Nat Cancer.

Intra-tumoral T cells in pediatric brain tumors display clonal expansion and effector properties

Upadhye A, Meza Landeros KE, Ramírez-Suástegui C, Schmiedel BJ, Woo E, Chee SJ, Malicki D, Coufal NG, Gonda D, Levy ML, Greenbaum JA, Seumois G, Crawford J, Roberts WD, Schoenberger SP, Cheroutre H, Ottensmeier CH, Vijayanand P, Ganesan AP.
03/03/2026

GPR25 promotes the formation of lung and liver tissue-resident memory CD8 T cells.

Feng H, Park S, Shin JW, Castañeda-Castro FE, Hernandez JR, Schmiedel BJ, Liu C, Jackson MR, Ottensmeier CH, Vijayanand P.
03/15/2025
  • Nat Commun

Crohn’s disease-associated variant in laccase domain containing 1 (lacc1) modulates t cell gene expression, metabolism and t cell function

Li Y, Ascui G, Dicker M, Riffelmacher T, Chandra V, Schmiedel B, Chou TF, Vijayanand P, Kronenberg M
11/10/2023
  • Sci Immunol

Transcriptomes and metabolism define mouse and human mait cell populations

Chandra S, Ascui G, Riffelmacher T, Chawla A, Ramirez-Suastegui C, Castelan VC, Seumois G, Simon H, Murray MP, Seo GY, Premlal ALR, Schmiedel B, Verstichel G, Li Y, Lin CH, Greenbaum J, Lamberti J, Murthy R, Nigro J, Cheroutre H, Ottensmeier CH, Hedrick SM, Lu LF, Vijayanand P, Kronenberg M
06/12/2020
  • Sci Immunol

Single-cell transcriptomic analysis of allergen-specific T cells in allergy and asthma

Seumois G, Ramírez-Suástegui C, Schmiedel BJ, Liang S, Peters B, Sette A, Vijayanand P.
04/01/2021
  • Genome Res.

Multi-cell type gene coexpression network analysis reveals coordinated interferon response and cross-cell type correlations in systemic lupus erythematosus.

Panwar B, Schmiedel BJ, Liang S, White B, Rodriguez E, Kalunian K, McKnight AJ, Soloff R, Seumois G, Vijayanand P, Ay F
11/19/2021
  • Nat Commun.

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types.

Schmiedel BJ, Rocha J, Gonzalez-Colin C, Bhattacharyya S, Madrigal A, Ottensmeier CH, Ay F, Chandra V, Vijayanand P.
01/19/2018
  • Sci Immunol

Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis

Patil VS, Madrigal A, Schmiedel BJ, Clarke J, O’Rourke P, de Silva AD, Harris E, Peters B, Seumois G, Weiskopf D, Sette A, Vijayanand P
02/25/2022
  • Science Immunology

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type–dependent effects of disease-risk variants

Benjamin J. Schmiedel,vCristian Gonzalez-Colin, Vicente Fajardo, Job Rocha, Ariel Madrigal, Ciro Ramirez-Suastegui, Sourya Bhattacharyya, Hayley Simon, Jason A. Greenbaum, Bjoern Peters, Gregory Seumois, Ferhat Ay, Vivek Chandra, Pandurangan, Vijayanand
11/29/2018
  • Cell

Impact of genetic polymorphisms on human immune cell gene expression

Schmiedel BJ, Singh D, Madrigal A, Valdovino-Gonzalez AG, White BM, Zaperdiel-Gonzalo J, Ha B, Altay G, Greenbaum JA, McVicker G, Seumois G, Rao A, Kronenberg M, Peters B, Vijayanand P
05/12/2023
  • Nat Commun

Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response.

Pagadala M, Sears TJ, Wu VH, Pérez-Guijarro E, Kim H, Castro A, Talwar JV, Gonzalez-Colin C, Cao S, Schmiedel BJ, Goudarzi S, Kirani D, Au J, Zhang T, Landi T, Salem RM, Morris GP, Harismendy O, Patel SP, Alexandrov LB, Mesirov JP, Zanetti M, Day CP, Fan CC, Thompson WK, Merlino G, Gutkind JS, Vijayanand P, Carter H.