Publications
									Feb 27, 2025								
				- EBioMedicine
 
A humanised ACE2, TMPRSS2, and FCGRT mouse model reveals the protective efficacy of anti-receptor binding domain antibodies elicited by SARS-CoV-2 hybrid immunity.
									Ana-Sosa-Batiz F, Verma SK, Shafee N, Miller R, Conner C, Hastie KM, Timis J, Maule E, Nguyen MN, Tran L, Varghese K, Madany H, Street AE, Zandonatti M, Moi ML, Jarnagin K, Webb DR, Saphire EO, Kim K, Shresta S.								
				
									Mar 25, 2025								
				- Cell Rep
 
Distinct features of a peripheral T helper subset that drives the B cell response in dengue virus infection
									Ansari A, Sachan S, Ahuja J, Venkadesan S, Nikam B, Kumar V, Jain S, Singh BP, Coshic P, Sikka K, Wig N, Sette A, Weiskopf D, Mohanty D, Soneja M, Gupta N								
				
									Feb 1, 2025								
				- J Immunol
 
Innateness transcriptome gradients characterize mouse t lymphocyte populations
									Ascui G, Cedillo-Castelan V, Mendis A, Phung E, Liu HY, Verstichel G, Chandra S, Murray MP, Luna C, Cheroutre H, Kronenberg M								
				
									Jul 1, 2025								
				- Cancer Med
 
Impact of Cancer Subtype and Cancer Therapy Exposures on SARS-CoV-2 Outcomes in the Omicron and Subvariant Era
									Atkins KM, Wang M, Silos KD, Joung SY, Singh A, Peony O, Gasho JO, Lee Y, Gastelum K, Filart BA, Kwan AC, Mendez M, Liu Y, Belen P, Prostko JC, Frias EC, Ebinger JE, Sharma S, Sobhani K, Cheng S								
				
									Jul 1, 2025								
				- Curr Res Microb Sci
 
Convalescent plasma therapy and long-term SARS-COV-2 antiviral immune response in a prospective cohort of patients with COVID-19
									Barrera A, Martínez-Valdebenito C, Nervi B, Gaete-Argel A, Gálvez NMS, Osses C, Vizcaya C, Ceballos ME, Pereira J, Chang M, Rojas L, Mondaca S, Henríquez C, Kalergis AM, Sette A, Grifoni A, Soto-Rifo R, Valiente-Echeverría F, Ferres M, Balcells ME, Corre NL								
				
									Mar 31, 2025								
				- Front Immunol
 
Design and development of highly conserved, HLA-promiscuous T cell multiepitope vaccines against human visceral leishmaniasis
									Barreto AS, de Franca MNF, Dos Reis TLDS, Silva JABM, Dos Santos PL, de Oliveira FA, da Silva AM, Magalhaes LS, Secco DA, Andrade MAF, Porto LC, Rosa DS, Cavalcante RCM, Corrêa CB, Sidney J, Sette A, de Almeida RP, Palatnik-de-Sousa CB								
				
									Jul 7, 2025								
				- Bioinformatics
 
Soffritto: A deep learning model for predicting high-resolution replication timing
									Bolzan D, Ay F								
				
									Mar 19, 2025								
				- Vaccine
 
Impact in the humoral and cellular immune response to SARS-CoV-2 variants after primary vaccination with AZD1222/COVISHIELD protocol in healthy adults
									Capão A, Araújo MF, Tort LFL, Toledo TS, Oliveira ACA, Caetano BC, Resende PC, Martins-Filho OA, Ribeiro-Alves M, Grifoni A, Weiskopf D, Sette A, Siqueira MM, Côrtes FH, Garcia CC								
				
									Mar 4, 2025								
				- Front Immunol
 
Comparative performance analysis of neoepitope prediction algorithms in head and neck cancer
									Chihab LY, Burel JG, Miller AM, Westernberg L, Brown B, Greenbaum J, Korrer MJ, Schoenberger SP, Joyce S, Kim YJ, Koşaloğlu-Yalçin Z, Peters B								
				
									Apr 3, 2025								
				- Biophys J.
 
Glycolysis model shows that allostery maintains high ATP and limits accumulation of intermediates
									Choe M, Einav T, Phillips R, Titov DV								
				
									Jun 13, 2025								
				- Sci Adv
 
AbEpiTope-1.0: Improved antibody target prediction by use of AlphaFold and inverse folding
									Clifford JN, Richardson E, Peters B, Nielsen M								
				
									Mar 28, 2025								
				- EBioMedicine
 
Preclinical development of a replication-competent vesicular stomatitis virus-based Lassa virus vaccine candidate advanced into human clinical trials.
									Cooper CL, Morrow G, Yuan M, Postler TS, Neal ML, Cross RW, Woolsey C, Agans KN, Borisevich V, McNamara RP, Atyeo C, Roy V, Germosen D, Hou F, Li SL, Reiserova L, Choi Y, Wilson A, Wagner D, Wallace-Selman O, Carpov A, Geng F, Frederick DJ, DeStefano J, Ercolini AM, Enriquez AS, Hastie KM, Ramos da Silva S, Sayeed E, Coleman JW, Kilianski A, Alter G, Saphire EO, Aitchison JD, Geisbert TW, Gupta SB, Feinberg MB, Parks CL.