Publications
Mar 31, 2025
- PLoS Computational Biology
Putting computational models of immunity to the test-An invited challenge to predict B.pertussis vaccination responses
Shinde P, Willemsen L, Anderson M, Aoki M, Basu S, Burel JG, Cheng P, Ghosh Dastidar S, Dunleavy A, Einav T, Forschmiedt J, Fourati S, Garcia J, Gibson W, Greenbaum JA, Guan L, Guan W, Gygi JP, Ha B, Hou J, Hsiao J, Huang Y, Jansen R, Kakoty B, Kang Z, Kobie JJ, Kojima M, Konstorum A, Lee J, Lewis SA, Li A, Lock EF, Mahita J, Mendes M, Meng H, Neher A, Nili S, Olsen LR, Orfield S, Overton JA, Pai N, Parker C, Qian B, Rasmussen M, Reyna J, Richardson E, Safo S, Sorenson J, Srinivasan A, Thrupp N, Tippalagama R, Trevizani R, Ventz S, Wang J, Wu CC, Ay F, Grant B, Kleinstein SH, Peters B
Feb 5, 2025
- mBio
Targets of influenza human T-cell response are mostly conserved in H5N1
Sidney J, Kim A-R, de Vries RD, Peters B, Meade PS, Krammer F, Grifoni A, Sette A
May 21, 2025
- medRxiv [Preprint]
Oral live attenuated polio vaccines induce enhanced T-cell responses with broad antigen recognition compared to inactivated polio vaccines
Snyder J, Slavik M, Harvey P, Del Rio-Guerra R, Mainou BA, Sette A, Kirkpatrick BD, Grifoni A, Crothers JW
Jun 1, 2025
- EBioMedicine
Leveraging pre-vaccination antibody titres across multiple influenza H3N2 variants to forecast the post-vaccination response
Stacey H, Carlock MA, Allen JD, Hanley HB, Crotty S, Ross TM, Einav T
- bioRxiv [Preprint]
Local B-cell immunity and durable memory following live-attenuated influenza intranasal vaccination of humans
Stacey HD, Garin-Ortega L, Lopez PG, Ramezani-Rad P, Ramierz SI, Faraji F, Bhavsar D, Levi G, Krammer F, Crotty S
Apr 1, 2025
- J Immunol
Combination therapy blocking TNF superfamily members 14 and 15 reverses pulmonary fibrosis
Steele H, Willicut A, Dell G, Ghastine A, Nguyen XX, Lembicz P, Doerflein H, Suchoski T, Kato E, Feghali-Bostwick C, Croft M, Herro R
Feb 27, 2025
- bioRxiv [Preprint]
Human memory CD4+ T-cells recognize Mycobacterium tuberculosis-infected macrophages amid broader pathogen-specific responses
Stetsenko V, Gail DP, Reba S, Suzart VG, Sandhu AK, Sette A, Dezfulian MH, Arlehamn CSL, Carpenter SM
May 21, 2025
- Int Immunol
The TET-TDG axis in T cells and biological processes
Suzuki K, Rao A, Onodera A
Jun 17, 2025
- ArXiv [Preprint]
The Cell Ontology in the age of single-cell omics
Tan SZK, Puig-Barbe A, Goutte-Gattat D, Eastwood C, Aevermann B, Avola A, Balhoff JP, Bayindir IU, Belfiore J, Caron AR, Fischer DS, George N, Gyori BM, Haendel MA, Hoyt CT, Kir H, Lubiana T, Matentzoglu N, Overton JA, Peng B, Peters B, Quardokus EM, Ray PL, Roncaglia P, Rivera AD, Stefancsik R, Teh WK, Toro S, Vasilevsky N, Xu C, Zhang Y, Scheuermann RH, Mungall CJ, Diehl AD, Osumi-Sutherland D
Jan 12, 2025
- Vaccine
Safety and immunogenicity of an inactivated recombinant Newcastle disease virus vaccine expressing SARS-CoV-2 spike: A randomised, comparator-controlled, phase 2 trial
Thiem VD, Anh DD, Ha VH, Van Thom N, Thang TC, Mateus J, Carreño JM, Raghunandan R, Huong NM, Mercer LD, Flores J, Escarrega EA, Raskin A, Thai DH, Van Be L, Sette A, Innis BL, Krammer F, Weiskopf D
May 11, 2025
- bioRxiv [Preprint]
Peptide Driven Identification of TCRs (PDI-TCR) reveals dynamics and phenotypes of CD4 T cells in tuberculosis
Tippalagama R, Trevizani R, Chihab LY, Chawla A, Fung K, Greenbaum J, Kearns K, De Silva AD, Gunasinghe W, Perera J, Gunasekera H, Senevirathne DD, Scriba TJ, Sette A, Arlehamn CSL, Burel JG, Peters B
Jul 7, 2025
- EMBO J
Master transcription-factor binding sites constitute the core of early replication control elements
Turner JL, Hinojosa-Gonzalez L, Sasaki T, Uchino S, Vouzas A, Soto MS, Chakraborty A, Alexander KE, Fitch CA, Brown AN, Ay F, Gilbert DM