• Careers
    • Open Positions
    • Postdoctoral Training
    • Postdoctoral Association
    • Internships
  • Contact
    • Media Inquiries
  • Intranet
La Jolla Institute for Immunology
  • Research
    • Databases
      • Database of Immune Cell Epigenomics
      • Immune Epitope Database
    • Diseases (A-Z)
    • Licensing Opportunities
    • Initiatives
    • Publications
    • Research Centers
      • Center for Autoimmunity and Inflammation
      • Center for Cancer Immunotherapy
      • Center for Infectious Disease and Vaccine Research
    • Research Services
      • Bioinformatics
      • Clinical Studies
      • Cryo-EM
      • DLAC
      • Flow Cytometry
      • Histopathology
      • Microscopy & Histology
      • Next Generation Sequencing
    • Technology Development
  • Labs
    • Ay Lab
    • Benedict Lab
    • Cheroutre Lab
    • Croft Lab
    • Crotty Lab
    • Hedrick Lab
    • Hogan Lab
    • Kawakami Lab
    • Kronenberg Lab
    • Ley Lab
    • Lindestam Arlehamn Lab
    • Myers Lab
    • Peters Lab
    • Rao Lab
    • Saphire Lab
    • Schoenberger Lab
    • Sette Lab
    • Sharma Lab
    • Shresta Lab
    • Vijayanand Lab
    • von Herrath Lab
    • Weiskopf Lab
  • News
    • Blog
    • Life Without Disease STORIES
    • Magazine
    • News
    • Videos
  • Events
    • Art Competition
    • Life Without Disease Event Series
    • Live from the Lab
    • Scientific Seminars
  • About Us
    • Overview
      • History
      • Institute Facts
    • Our Team
      • Leadership
      • Faculty
        • Emeriti
        • Clinical Associates
      • Board of Directors
      • Scientific Advisory Board
    • Statements
      • LJI Diversity and Inclusion Statement
      • Vaccines
  • Support
    • Overview
    • Giving Opportunities
      • The Tullie and Rickey Families SPARK Program
      • Center for Precision Immunotherapy
      • Together for Asthma
      • SURGE Program
    • Ways to Give
    • Vanguard Giving Society
    • Planned Giving
    • CARES Act
    • Advancement Team
    • Clinical Studies
    • DONATE
  • Careers
    • Open Positions
    • Postdoctoral Training
    • Postdoctoral Association
    • Internships
  • Contact
    • Media Inquiries
Support

Publications

Reset
Sep 23, 2016 PLoS Genet
Neocentromeres provide chromosome segregation accuracy and centromere clustering to multiple loci along a candida albicans chromosome
Burrack LS, Hutton HF, Matter KJ, Clancey SA, Liachko I, Plemmons AE, Saha A, Power EA, Turman B, Thevandavakkam MA, Ay F, Dunham MJ, Berman J
May 27, 2016 Genome Biol
A multitask graph-clustering approach for chomosome conformation capture data sets identifies conserved modules of chromosomal interactions
Fotuhi Siahpirani A, Ay F, Roy S
Feb 29, 2016 Nucleic Acids Res
A predictive modeling approach for cell line-specific long-range regulatory interactions
Roy S, Siahpirani AF, Chasman D, Knaak S, Ay F, Stewart R, Wilson M, Sridharan R
Sep 25, 2015 Genome Research
Comprehensive identification and analysis of human accelerated regulatory DNA
RM. Gittelman, E. Hun, F. Ay, J. Madeoy, L. Pennacchio, WS. Noble, RD. Hawkins, JM. Akey
Sep 2, 2015 Genome Biology
Analysis methods for studying the 3D architecture of the genome
F. Ay, WS. Noble
Aug 25, 2015 Genome Research
Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program
V. Dileep, F. Ay, J. Sima, DL. Vera, WS. Noble, DM. Gilbert
Aug 7, 2015 Genome Biology
Bipartite structure of the inactive mouse X chromosome
X. Deng, W. Ma, V. Rmani, A. Hill, F. Yang, F. Ay, JB. Berletch, CA. Blau, J. Shendure, WS. Noble, CM. Disteche
Jun 23, 2015 Nucleic Acids Research
Accurate identification of centromere locations in yeast genomes using Hi-C
N. Varoquaux, I. Liachko, F. Ay, JN. Burton, J. Shendure, MJ. Dunham, JP. Vert, WS. Noble
Apr 25, 2015 Genome Research
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression
MW. Libbrecht, F. Ay, MM. Hoffman, DM. Gilbert, JA. Bilmes, WS. Noble
Feb 25, 2015 BMC Genomics
Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C
F. Ay, TH. Vu, MJ. Zeitz, N. Varoquax, JE. Carette, JP. Vert, AR. Hoffman, WS. Noble
Dec 1, 2014 Nature Methods
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
W. Ma, F. Ay, C. Lee, G. Gulsoy, X. Deng, S. Cook, J. Hesson, C. Cavanaugh, CB. Ware, A. Krumm, J. Shendure, CA. Blau, CM. Disteche, WS. Noble
Nov 1, 2014 Bioessays
Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum
F. Ay, EM. Bunnik, N. Varoquax, JP. Vert, WS. Noble, KG. Le Roch
  • 1
  • 2
  • 3
  • 4
  • 5
  • Contact Us
  • Careers
  • Terms & Conditions
  • Privacy Policy
La Jolla Institute for Immunology

contact@lji.org
9420 Athena Circle
La Jolla, CA 92037

Phone: +1 (858) 752-6500

© 2020 La Jolla Institute for Immunology. All rights reserved.LJI is a 501(c)3 tax-exempt organization.Federal Tax ID Number 33-0328688









 

Designed and Developed by Creative Science Labs

Location:
We use cookies to analyze site traffic and to ensure that we give you the best experience on our website. We do not sell data obtained through the use of cookies. By continuing to use this website, you consent to the use of cookies in accordance with our Privacy Policy.OkPrivacy policy