Publications

Metabolic Network Alignment in Large Scale by Network Compression.

F. Ay, M. Dang and T. Kahveci

SubMAP: Aligning metabolic pathways with subnetwork mappings.

F. Ay, M. Kellis and T. Kahveci.

Identification of functional elements and regulatory circuits by Drosophila modENCODE

The modENCODE Consortium, S. Roy*, J. Ernst*, P.V. Kharchenko*, P. Kheradpour*, N. Negre*, M.L. Eaton*, J.M. Landolin*, C.A. Bristow*, L. Ma*, M.F. Lin*, S. Washiet*, B.I. Arshino *, F. Ay*, P.E. Meyer*, N. Robine*, N. L Washington*, L.D. Stefano*, et. al., S.E. Celniker, S. Heniko , G.H. Karpen, E.C. Lai, D.M. MacAlpine, L.D. Stein, K.P. White and M.Kellis.

Scalable steady state analysis of Boolean biological regulatory networks.

F. Ay, F. Xu, and T. Kahveci.

A fast and accurate algorithm for comparative analysis of metabolic pathways

F. Ay, T. Kahveci, and V. de Crecy-Lagard.