RNA-seq preprocessing and sample size considerations for gene network inference

Jan 3, 2023 bioRxiv

RNA-seq preprocessing and sample size considerations for gene network inference

Altay G, Zapardiel-Gonzalo J, Peters B

Jan 23, 2023 Cell Rep

Bivalent intra-spike binding provides durability against emergent Omicron lineages: Results from a global consortium

Callaway HM, Hastie KM, Schendel SL, Li H, Yu X, Shek J, Buck T, Hui S, Bedinger D, Troup C, Dennison SM, Li K, Alpert MD, Bailey CC, Benzeno S, Bonnevier JL, Chen JQ, Chen C, Cho H, Crompton PD, Dussupt V, Entzminger KC, Ezzyat Y, Fleming JK, Geukens N, Gilbert AE, Guan Y, Han X, Harvey CJ, Hatler JM, Howie B, Hu C, Huang A, Imbrechts M, Jin A, Kamachi N, Keitany G, Klinger M, Kolls JK, Krebs SJ, Li T, Luo F, Maruyama T, Meehl MA, Mendez-Rivera L, Musa A, Okumura CJ, Rubin BER, Sato AK, Shen M, Singh A, Song S, Tan J, Trimarchi JM, Upadhyay DP, Wang Y, Yu L, Yuan TZ, Yusko E, Peters B, Tomaras G, Saphire EO

Jan 11, 2023 Front Immunol

Single-cell profiling reveals distinct subsets of CD14+ monocytes drive blood immune signatures of active tuberculosis

Hillman H, Khan N, Singhania A, Dubelko P, Soldevila F, Tippalagama R, DeSilva AD, Gunasena B, Perera J, Scriba TJ, Ontong C, Fisher M, Luabeya A, Taplitz R, Seumois G, Vijayanand P, Hedrick CC, Peters B, Burel JG

Feb 1, 2023 HLA

Expression of specific HLA class II alleles is associated with an increased risk for active tuberculosis and a distinct gene expression profile

Chihab LY, Kuan R, Phillips EJ, Mallal SA, Rozot V, Davis MM, Scriba TJ, Sette A, Peters B, Lindestam Arlehamn CS; SATVI Study Group

Feb 10, 2023 Database (Oxford)

Coronavirus Immunotherapeutic Consortium Database.

Mahita J, Ha B, Gambiez A, Schendel SL, Li H, Hastie KM, Dennison SM, Li K, Kuzmina N, Periasamy S, Bukreyev A, Munt JE, Osei-Twum M, Atyeo C, Overton JA, Vita R, Guzman-Orozco H, Mendes M, Kojima M, Halfmann PJ, Kawaoka Y, Alter G, Gagnon L, Baric RS, Tomaras GD, Germann T, Bedinger D, Greenbaum JA, Saphire EO, Peters B

Jan 6, 2023 Nucleic Acids Res

The Cancer Epitope Database and Analysis Resource (CEDAR)

Koşaloğlu-Yalçın Z, Blazeska N, Vita R, Carter H, Nielsen M, Schoenberger S, Sette A, Peters B

Jan 1, 2023 J Allergy Clin Immunol

T-cell epitope discovery and single-cell technologies to advance food allergy research

Lewis SA, Peters B

Jan 12, 2023 Front Genet

Estimating tissue-specific peptide abundance from public RNA-Seq data

Frentzen A, Greenbaum JA, Kim H, Peters B, Koşaloğlu-Yalçın Z

Feb 21, 2023 Protein Sci

IEDB-3D 2.0: Structural data analysis within the Immune Epitope Database

Mendes M, Mahita J, Blazeska N, Greenbaum J, Ha B, Wheeler K, Wang J, Shackelford D, Sette A, Peters B

Feb 3, 2023 Vaccine

Immunodominant T cell peptides from four candidate malarial antigens as biomarkers of protective immunity against malaria

Belmonte M, Ganeshan H, Huang J, Belmonte A, Inoue S, Velasco R, Acheampong N, Ofori EA, Akyea-Mensah K, Frimpong A, Ennuson NA, Frempong AF, Kyei-Baafour E, Amoah LE, Edgel K, Peters B, Villasante E, Kusi KA, Sedegah M

Jan 24, 2023 JCI Insight

Tumor cells fail to present MHC-II-restricted epitopes derived from oncogenes to CD4+ T cells

Brightman SE, Naradikian MS, Thota RR, Becker A, Montero L, Bahmanof M, Premlal ALR, Greenbaum JA, Peters B, Cohen EE, Miller AM, Schoenberger SP

Feb 14, 2023 Institute News

New $17 million grant establishes LJI as global hub for immunology data curation and analysis

NIAID support opens gateway to new research into human immune responses to viruses, the development of autoimmune diseases, and more